dgit.raspbian.org Git - ncbi-blast+.git/commit

author	Aaron M. Ucko <ucko@debian.org>
	Sun, 26 Apr 2020 01:41:38 +0000 (21:41 -0400)
committer	Aaron M. Ucko <ucko@debian.org>
	Sun, 26 Apr 2020 01:41:38 +0000 (21:41 -0400)
commit	3267542fe5a4acac4d0eef647326996ec987db79
tree	9fa0850a95d39801c3779ec7874559d7153fbe91	tree \| snapshot
parent	777af4037326cc3a73f30190a1eb7bc591a27905	commit \| diff

New upstream version 2.10.0

1460 files changed:

c++/compilers/unix/GCC.sh		diff \| blob \| history
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c++/compilers/xcode30_prj/dll/ncbi_gbench.xcodeproj/project.pbxproj		diff \| blob \| history
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c++/compilers/xcode30_prj/static/ncbi_gui.xcodeproj/project.pbxproj		diff \| blob \| history
c++/include/algo/blast/api/blast_dbindex.hpp		diff \| blob \| history
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c++/include/algo/blast/api/blast_options_builder.hpp		diff \| blob \| history
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c++/include/algo/blast/api/search_strategy.hpp		diff \| blob \| history
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c++/include/algo/blast/blastinput/blast_args.hpp		diff \| blob \| history
c++/include/algo/blast/blastinput/blast_input.hpp		diff \| blob \| history
c++/include/algo/blast/blastinput/blast_input_aux.hpp		diff \| blob \| history
c++/include/algo/blast/blastinput/cmdline_flags.hpp		diff \| blob \| history
c++/include/algo/blast/core/blast_hits.h		diff \| blob \| history
c++/include/algo/blast/core/blast_hspstream.h		diff \| blob \| history
c++/include/algo/blast/core/blast_options.h		diff \| blob \| history
c++/include/algo/blast/dbindex/dbindex.hpp		diff \| blob \| history
c++/include/algo/blast/dbindex/sequence_istream.hpp		diff \| blob \| history
c++/include/algo/blast/format/blast_format.hpp		diff \| blob \| history
c++/include/algo/blast/format/build_archive.hpp		diff \| blob \| history
c++/include/algo/blast/igblast/igblast.hpp		diff \| blob \| history
c++/include/algo/blast/proteinkmer/mhfile.hpp		diff \| blob \| history
c++/include/algo/winmask/seq_masker.hpp		diff \| blob \| history
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c++/include/algo/winmask/seq_masker_istat_ascii.hpp		diff \| blob \| history
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c++/include/algo/winmask/win_mask_config.hpp		diff \| blob \| history
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c++/include/common/config/ncbiconf_xcode.h		diff \| blob \| history
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c++/include/connect/ncbi_blowfish.h	[new file with mode: 0644]	blob
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c++/include/connect/ncbi_conn_exception.hpp		diff \| blob \| history
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c++/include/connect/ncbi_connutil.h		diff \| blob \| history
c++/include/connect/ncbi_core.h		diff \| blob \| history
c++/include/connect/ncbi_heapmgr.h		diff \| blob \| history
c++/include/connect/ncbi_http_connector.h		diff \| blob \| history
c++/include/connect/ncbi_http_session.hpp		diff \| blob \| history
c++/include/connect/ncbi_lbos.hpp		diff \| blob \| history
c++/include/connect/ncbi_pipe.hpp		diff \| blob \| history
c++/include/connect/ncbi_service.hpp	[new file with mode: 0644]	blob
c++/include/connect/ncbi_service_cxx.hpp		diff \| blob \| history
c++/include/connect/ncbi_socket.h		diff \| blob \| history
c++/include/connect/ncbi_socket_connector.h		diff \| blob \| history
c++/include/connect/ncbi_types.h		diff \| blob \| history
c++/include/connect/ncbi_util.h		diff \| blob \| history
c++/include/connect/server.hpp		diff \| blob \| history
c++/include/connect/services/compound_id.hpp		diff \| blob \| history
c++/include/connect/services/grid_client.hpp		diff \| blob \| history
c++/include/connect/services/grid_client_app.hpp		diff \| blob \| history
c++/include/connect/services/grid_globals.hpp		diff \| blob \| history
c++/include/connect/services/grid_rw_impl.hpp		diff \| blob \| history
c++/include/connect/services/grid_worker.hpp		diff \| blob \| history
c++/include/connect/services/grid_worker_app.hpp		diff \| blob \| history
c++/include/connect/services/json_over_uttp.hpp		diff \| blob \| history
c++/include/connect/services/netcache_api.hpp		diff \| blob \| history
c++/include/connect/services/netcache_api_expt.hpp		diff \| blob \| history
c++/include/connect/services/neticache_client.hpp		diff \| blob \| history
c++/include/connect/services/netschedule_api_expt.hpp		diff \| blob \| history
c++/include/connect/services/netservice_api.hpp		diff \| blob \| history
c++/include/connect/services/netservice_api_expt.hpp		diff \| blob \| history
c++/include/connect/services/netservice_protocol_parser.hpp		diff \| blob \| history
c++/include/connect/services/netstorage.hpp		diff \| blob \| history
c++/include/connect/services/ns_client_factory.hpp		diff \| blob \| history
c++/include/connect/services/remote_app.hpp		diff \| blob \| history
c++/include/connect/services/srv_connections.hpp		diff \| blob \| history
c++/include/connect/services/srv_connections_expt.hpp		diff \| blob \| history
c++/include/connect/threaded_server.hpp		diff \| blob \| history
c++/include/corelib/blob_storage.hpp		diff \| blob \| history
c++/include/corelib/error_codes.hpp		diff \| blob \| history
c++/include/corelib/expr.hpp		diff \| blob \| history
c++/include/corelib/impl/ncbi_dbsvcmapper.hpp		diff \| blob \| history
c++/include/corelib/impl/ncbi_param_impl.hpp		diff \| blob \| history
c++/include/corelib/interprocess_lock.hpp		diff \| blob \| history
c++/include/corelib/ncbi_config.hpp		diff \| blob \| history
c++/include/corelib/ncbi_cookies.hpp		diff \| blob \| history
c++/include/corelib/ncbi_message.hpp		diff \| blob \| history
c++/include/corelib/ncbi_param.hpp		diff \| blob \| history
c++/include/corelib/ncbi_process.hpp		diff \| blob \| history
c++/include/corelib/ncbi_safe_static.hpp		diff \| blob \| history
c++/include/corelib/ncbi_system.hpp		diff \| blob \| history
c++/include/corelib/ncbi_url.hpp		diff \| blob \| history
c++/include/corelib/ncbiapp.hpp		diff \| blob \| history
c++/include/corelib/ncbiapp_api.hpp	[new file with mode: 0644]	blob
c++/include/corelib/ncbiargs.hpp		diff \| blob \| history
c++/include/corelib/ncbidbg.hpp		diff \| blob \| history
c++/include/corelib/ncbidiag.hpp		diff \| blob \| history
c++/include/corelib/ncbidll.hpp		diff \| blob \| history
c++/include/corelib/ncbienv.hpp		diff \| blob \| history
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c++/include/corelib/ncbiobj.hpp		diff \| blob \| history
c++/include/corelib/ncbireg.hpp		diff \| blob \| history
c++/include/corelib/ncbistl.hpp		diff \| blob \| history
c++/include/corelib/ncbistr.hpp		diff \| blob \| history
c++/include/corelib/ncbistre.hpp		diff \| blob \| history
c++/include/corelib/ncbisys.hpp	[new file with mode: 0644]	blob
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c++/include/corelib/ncbitime.hpp		diff \| blob \| history
c++/include/corelib/plugin_manager.hpp		diff \| blob \| history
c++/include/corelib/request_control.hpp		diff \| blob \| history
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c++/include/corelib/version.hpp		diff \| blob \| history
c++/include/corelib/version_api.hpp	[new file with mode: 0644]	blob
c++/include/db/sqlite/sqlitewrapp.hpp		diff \| blob \| history
c++/include/dbapi/cache/dbapi_blob_cache.hpp		diff \| blob \| history
c++/include/dbapi/driver/dbapi_conn_factory.hpp		diff \| blob \| history
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c++/include/dbapi/driver/util/blobstore.hpp		diff \| blob \| history
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c++/include/html/html_exception.hpp		diff \| blob \| history
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c++/include/ncbi_pch.hpp		diff \| blob \| history
c++/include/ncbi_source_ver.h		diff \| blob \| history
c++/include/ncbiconf.h		diff \| blob \| history
c++/include/objects/biblio/Auth_list.hpp		diff \| blob \| history
c++/include/objects/biblio/Author.hpp		diff \| blob \| history
c++/include/objects/blast/names.hpp		diff \| blob \| history
c++/include/objects/blastdb/Blast_def_line_set.hpp		diff \| blob \| history
c++/include/objects/general/Dbtag.hpp		diff \| blob \| history
c++/include/objects/general/User_object.hpp		diff \| blob \| history
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c++/include/objects/genomecoll/cached_assembly.hpp		diff \| blob \| history
c++/include/objects/genomecoll/genomic_collections_cli.hpp		diff \| blob \| history
c++/include/objects/macro/String_constraint.hpp		diff \| blob \| history
c++/include/objects/misc/error_codes.hpp		diff \| blob \| history
c++/include/objects/seq/annot_mapper_exception.hpp		diff \| blob \| history
c++/include/objects/seq/seq_loc_mapper_base.hpp		diff \| blob \| history
c++/include/objects/seq/sofa_map.hpp		diff \| blob \| history
c++/include/objects/seqalign/Seq_align.hpp		diff \| blob \| history
c++/include/objects/seqalign/seqalign_exception.hpp		diff \| blob \| history
c++/include/objects/seqfeat/SeqFeatData.hpp		diff \| blob \| history
c++/include/objects/seqloc/PDB_seq_id.hpp		diff \| blob \| history
c++/include/objects/seqloc/Seq_id.hpp		diff \| blob \| history
c++/include/objects/seqloc/Seq_loc.hpp		diff \| blob \| history
c++/include/objects/seqset/seqset_exception.hpp		diff \| blob \| history
c++/include/objects/seqtable/seq_table_exception.hpp		diff \| blob \| history
c++/include/objects/taxon1/local_taxon.hpp		diff \| blob \| history
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c++/include/objects/trackmgr/TMgr_ClientInfo.hpp		diff \| blob \| history
c++/include/objects/trackmgr/gridrpcclient.hpp		diff \| blob \| history
c++/include/objects/valerr/ValidErrItem.hpp		diff \| blob \| history
c++/include/objects/valid/Comment_set.hpp		diff \| blob \| history
c++/include/objmgr/annot_types_ci.hpp		diff \| blob \| history
c++/include/objmgr/bioseq_handle.hpp		diff \| blob \| history
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c++/include/objmgr/gc_assembly_parser.hpp		diff \| blob \| history
c++/include/objmgr/impl/annot_collector.hpp		diff \| blob \| history
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c++/include/objmgr/impl/seq_annot_info.hpp		diff \| blob \| history
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c++/include/objmgr/prefetch_manager.hpp		diff \| blob \| history
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c++/include/objmgr/seq_entry_handle.hpp		diff \| blob \| history
c++/include/objmgr/seq_loc_mapper.hpp		diff \| blob \| history
c++/include/objmgr/split/object_splitinfo.hpp		diff \| blob \| history
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c++/include/objmgr/util/sequence.hpp		diff \| blob \| history
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c++/include/objtools/align_format/align_format_util.hpp		diff \| blob \| history
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c++/include/objtools/align_format/taxFormat.hpp		diff \| blob \| history
c++/include/objtools/alnmgr/alnexception.hpp		diff \| blob \| history
c++/include/objtools/alnmgr/score_builder_base.hpp		diff \| blob \| history
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c++/include/objtools/blast/gene_info_reader/gene_info.hpp		diff \| blob \| history
c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp		diff \| blob \| history
c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp		diff \| blob \| history
c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp		diff \| blob \| history
c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp		diff \| blob \| history
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c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp		diff \| blob \| history
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c++/include/objtools/blast/seqdb_writer/writedb_lmdb.hpp		diff \| blob \| history
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c++/include/objtools/cleanup/cleanup_pub.hpp		diff \| blob \| history
c++/include/objtools/cleanup/fix_feature_id.hpp		diff \| blob \| history
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c++/include/objtools/data_loaders/genbank/gbnative.hpp	[new file with mode: 0644]	blob
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c++/include/objtools/data_loaders/genbank/impl/processors.hpp		diff \| blob \| history
c++/include/objtools/data_loaders/genbank/impl/psg_loader_impl.hpp	[new file with mode: 0644]	blob
c++/include/objtools/data_loaders/genbank/impl/request_result.hpp		diff \| blob \| history
c++/include/objtools/data_loaders/genbank/psg_loader.hpp	[new file with mode: 0644]	blob
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c++/include/objtools/edit/cds_fix.hpp		diff \| blob \| history
c++/include/objtools/edit/edit_error.hpp		diff \| blob \| history
c++/include/objtools/edit/feattable_edit.hpp		diff \| blob \| history
c++/include/objtools/edit/feature_propagate.hpp		diff \| blob \| history
c++/include/objtools/edit/gap_trim.hpp		diff \| blob \| history
c++/include/objtools/edit/gaps_edit.hpp		diff \| blob \| history
c++/include/objtools/edit/seq_edit.hpp	[new file with mode: 0644]	blob
c++/include/objtools/edit/text_object_description.hpp		diff \| blob \| history
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